ÖNDER KAMIL
- former member of the university
Publications
65 Publications
2017
Journal Articles
Organotypic three-dimensional cancer cell cultures mirror drug responses
Jacobi, N; Seeboeck, R; Hofmann, E; Schweiger, H; Smolinska, V; Mohr, T; Boyer, A; Sommergruber, W; Lechner, P; Pichler-Huebschmann, C; Onder, K; Hundsberger, H; Wiesner, C; Eger, A
ONCOTARGET. 2017; 8(64): 107423-107440.
Full papers/articles (Journal)
Structural analysis and interaction studies of acyl-carrier protein (acpP) of Staphylococcus aureus, an extraordinarily thermally stable protein
Volk, K; Breunig, SD; Rid, R; Herzog, J; Brauer, M; Hundsberger, H; Klein, C; Muller, N; Oender, K
BIOL CHEM. 2017; 398(1): 125-133.
Full papers/articles (Journal)
2016
Journal Articles
High dynamic range detection of Chlamydia trachomatis growth by direct quantitative PCR of the infected cells.
Eszik, I; Lantos, I; Onder, K; Somogyvari, F; Burian, K; Endresz, V; Virok, DP
J MICROBIOL METH. 2016; 120: 15-22.
Full papers/articles (Journal)
The combinatorial approach of laser-captured microdissection and reverse transcription quantitative polymerase chain reaction accurately determines HER2 status in breast cancer.
Hofmann, E; Seeboeck, R; Jacobi, N; Obrist, P; Huter, S; Klein, C; Oender, K; Wiesner, C; Hundsberger, H; Eger, A
BIOMARK RES. 2016; 4: 8
Full papers/articles (Journal)
In vitro toxicity of the galanin receptor 3 antagonist SNAP 37889.
Koller, A; Rid, R; Beyreis, M; Bianchini, R; Holub, BS; Lang, A; Locker, F; Brodowicz, B; Velickovic, O; Jakab, M; Kerschbaum, H; Önder, K; Kofler, B;
Neuropeptides. 2016; 56:83-88
Full papers/articles (Journal)
2015
Journal Articles
Whole-transcriptome gene expression profiling in an epidermolysis bullosa simplex Dowling-Meara model keratinocyte cell line uncovered novel, potential therapeutic targets and affected pathways.
Herzog, J; Rid, R; Wagner, M; Hundsberger, H; Eger, A; Bauer, J; Önder, K;
BMC Res Notes. 2015; 8(1): 785
Full papers/articles (Journal)
2014
Journal Articles
Application of DNA Chip Scanning Technology for Automatic Detection of Chlamydia trachomatis and Chlamydia pneumoniae Inclusions.
Bogdanov, A; Endrész, V; Urbán, S; Lantos, I; Deák, J; Burián, K; Onder, K; Ayaydin, F; Balázs, P; Virok, DP;
Antimicrob Agents Chemother. 2014; 58(1): 405-413.
Full papers/articles (Journal)
Compound screening and transcriptional profiling in human primary keratinocytes: a brief guideline.
Rid, R; Hundsberger, H; Onder, K;
Methods Mol Biol. 2014; 1195:99-109
Full papers/articles (Journal)
2013
Journal Articles
A de novo-designed antimicrobial peptide with activity against multiresistant Staphylococcus aureus acting on RsbW kinase.
Dangel, A; Ackermann, N; Abdel-Hadi, O; Maier, R; Onder, K; Francois, P; Müller, CW; Pané-Farré, J; Engelmann, S; Schrenzel, J; Heesemann, J; Lindermayr, C;
FASEB J. 2013; 27(11):4476-4488
Full papers/articles (Journal)
In vitro analysis of photosensitizer accumulation for assessment of applicability of fluorescence diagnosis of squamous cell carcinoma of epidermolysis bullosa patients.
Larisch, P; Verwanger, T; Onder, K; Krammer, B;
Biomed Res Int. 2013; 2013:521281
Full papers/articles (Journal)
Cell-based arrays for the identification of interacting polypeptide domains or epitopes.
Maier, RH; Maier, CJ; Onder, K;
Methods Mol Biol. 2013; 1061:211-229
Full papers/articles (Journal)
Murgocil is a highly bioactive staphylococcal-specific inhibitor of the peptidoglycan glycosyltransferase enzyme MurG.
Mann, PA; Müller, A; Xiao, L; Pereira, PM; Yang, C; Ho Lee, S; Wang, H; Trzeciak, J; Schneeweis, J; Dos Santos, MM; Murgolo, N; She, X; Gill, C; Balibar, CJ; Labroli, M; Su, J; Flattery, A; Sherborne, B; Maier, R; Tan, CM; Black, T; Onder, K; Kargman, S; Monsma, FJ; Pinho, MG; Schneider, T; Roemer, T;
ACS Chem Biol. 2013; 8(11): 2442-2451.
Full papers/articles (Journal)
A combined impedance and AlphaLISA-based approach to identify anti-inflammatory and barrier-protective compounds in human endothelium.
Pflüger, M; Kapuscik, A; Lucas, R; Koppensteiner, A; Katzlinger, M; Jokela, J; Eger, A; Jacobi, N; Wiesner, C; Hofmann, E; Onder, K; Kopecky, J; Schütt, W; Hundsberger, H;
J Biomol Screen. 2013; 18(1):6-74
Full papers/articles (Journal)
From the ORFeome concept to highly comprehensive, full-genome screening libraries.
Rid, R; Abdel-Hadi, O; Maier, R; Wagner, M; Hundsberger, H; Hintner, H; Bauer, J; Onder, K;
Assay Drug Dev Technol. 2013; 11(1):52-57
Full papers/articles (Journal)
Real-time monitoring of relative Peptide-protein interaction strengths in the yeast two-hybrid system.
Rid, R; Herzog, J; Maier, RH; Hundsberger, H; Eger, A; Hintner, H; Bauer, JW; Onder, K;
Assay Drug Dev Technol. 2013; 11(4): 269-275.
Full papers/articles (Journal)
PRIMOS: An Integrated Database of Reassessed Protein-Protein Interactions Providing Web-Based Access to In Silico Validation of Experimentally Derived Data
Rid, R; Strasser, W; Siegl, D; Frech, C; Kommenda, M; Kern, T; Hintner, H; Bauer, JW; Onder, K
ASSAY DRUG DEV TECHN. 2013; 11(5): 333-346.
Full papers/articles (Journal)
Deciphering the calcitriol-induced transcriptomic response in keratinocytes: presentation of novel target genes.
Rid, R; Wagner, M; Maier, CJ; Hundsberger, H; Hintner, H; Bauer, JW; Onder, K;
J Mol Endocrinol. 2013; 50(2): 131-149.
Full papers/articles (Journal)
Imbalance of intermediate filament component keratin 14 contributes to increased stress signalling in epidermolysis bullosa simplex.
Wagner, M; Trost, A; Hintner, H; Bauer, JW; Onder, K;
Exp Dermatol. 2013; 22(4): 292-294.
Letters
2012
Journal Articles
PIM-1 kinase interacts with the DNA binding domain of the vitamin D receptor: a further kinase implicated in 1,25-(OH)2D3 signaling.
Maier, CJ; Maier, RH; Rid, R; Trost, A; Hundsberger, H; Eger, A; Hintner, H; Bauer, JW; Onder, K;
BMC Mol Biol. 2012; 13:18
Full papers/articles (Journal)
Construction of a highly flexible and comprehensive gene collection representing the ORFeome of the human pathogen Chlamydia pneumoniae.
Maier, CJ; Maier, RH; Virok, DP; Maass, M; Hintner, H; Bauer, JW; Onder, K;
BMC Genomics. 2012; 13:632
Full papers/articles (Journal)
Quantitative real-time PCR as a sensitive protein-protein interaction quantification method and a partial solution for non-accessible autoactivator and false-negative molecule analysis in the yeast two-hybrid system.
Maier, RH; Maier, CJ; Hintner, H; Bauer, JW; Onder, K;
Methods. 2012; 58(4):376-384
Full papers/articles (Journal)
Gene expression analysis of an epidermolysis bullosa simplex Dowling-Meara cell line by subtractive hybridization: recapitulation of cellular differentiation, migration and wound healing.
Wagner, M; Hintner, H; Bauer, JW; Onder, K;
Exp Dermatol. 2012; 21(2):111-117
Full papers/articles (Journal)
DDX5 is a multifunctional co-activator of steroid hormone receptors.
Wagner, M; Rid, R; Maier, CJ; Maier, RH; Laimer, M; Hintner, H; Bauer, JW; Onder, K;
Mol Cell Endocrinol. 2012; 361(1-2): 80-91.
Full papers/articles (Journal)
2011
Journal Articles
Nosocomial Staphylococcal scalded skin syndrome caused by intra-articular injection.
Emberger, M; Koller, J; Laimer, M; Hell, M; Oender, K; Trost, A; Maass, M; Witte, W; Hintner, H; Lechner, AM;
J EUR ACAD DERMATOL. 2011; 25(2): 227-231.
Full papers/articles (Journal)
Construction of improved Yeast Two-Hybrid libraries.
Maier, RH; Maier, CJ; Onder, K;
Methods Mol Biol. 2011; 729:71-84
Full papers/articles (Journal)
2010
Journal Articles
Cytokeratin 8 interacts with clumping factor B: a new possible virulence factor target.
Haim, M; Trost, A; Maier, CJ; Achatz, G; Feichtner, S; Hintner, H; Bauer, JW; Onder, K;
Microbiology. 2010; 156(Pt 12):3710-3721
Full papers/articles (Journal)
Proteomic profiling reveals a catalogue of new candidate proteins for human skin aging.
Laimer, M; Kocher, T; Chiocchetti, A; Trost, A; Lottspeich, F; Richter, K; Hintner, H; Bauer, JW; Onder, K;
EXP DERMATOL. 2010; 19(10): 912-918.
Full papers/articles (Journal)
Coupled yeast 2-hybrid-mammalian 2-hybrid reading-frame-independent and site-specific recombinational cloning vector system.
Maier, CJ; Maier, RH; Hintner, H; Bauer, JW; Onder, K;
ASSAY DRUG DEV TECHN. 2010; 8(5): 625-629.
Full papers/articles (Journal)
Epitope mapping of antibodies using a cell array-based polypeptide library.
Maier, RH; Maier, CJ; Rid, R; Hintner, H; Bauer, JW; Onder, K;
J BIOMOL SCREEN. 2010; 15(4): 418-426.
Full papers/articles (Journal)
"Renaissance" of the Yeast Two-Hybrid System - Enhanced for Automation and High-Throughput to Support Proteome-Wide Research
Rid, R; Hintner, H; Bauer, JW; Onder, K
LETT DRUG DES DISCOV. 2010; 7(10): 765-789.
Reviews
Isolation and immunological characterization of a novel Cladosporium herbarum allergen structurally homologous to the alpha/beta hydrolase fold superfamily.
Rid, R; Onder, K; Hawranek, T; Laimer, M; Bauer, JW; Holler, C; Simon-Nobbe, B; Breitenbach, M;
MOL IMMUNOL. 2010; 47(6): 1366-1377.
Full papers/articles (Journal)
H2O2-dependent translocation of TCTP into the nucleus enables its interaction with VDR in human keratinocytes: TCTP as a further module in calcitriol signalling.
Rid, R; Onder, K; Trost, A; Bauer, J; Hintner, H; Ritter, M; Jakab, M; Costa, I; Reischl, W; Richter, K; MacDonald, S; Jendrach, M; Bereiter-Hahn, J; Breitenbach, M;
J STEROID BIOCHEM. 2010; 118(1-2): 29-40.
Full papers/articles (Journal)
K16 is a further new candidate for homotypic intermediate filament protein interactions.
Trost, A; Costa, I; Jakab, M; Ritter, M; Haim, M; Hintner, H; Bauer, JW; Onder, K;
Exp Dermatol. 2010; 19(8):e241-e250
Full papers/articles (Journal)
Aberrant heterodimerization of keratin 16 with keratin 6A in HaCaT keratinocytes results in diminished cellular migration.
Trost, A; Desch, P; Wally, V; Haim, M; Maier, RH; Reitsamer, HA; Hintner, H; Bauer, JW; Onder, K;
MECH AGEING DEV. 2010; 131(5): 346-353.
Full papers/articles (Journal)
2009
Journal Articles
Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis.
Frech, C; Kommenda, M; Dorfer, V; Kern, T; Hintner, H; Bauer, JW; Onder, K;
BMC Bioinformatics. 2009; 10:21
Full papers/articles (Journal)
PRIMOS: AN INTEGRATED PLATFORM FOR EXPLORING PROTEIN-PROTEIN INTERACTIONS
Kern, T; Kommenda, M; Dorfer, V; Bauer, JW; Onder, K
. 2009; 199-203.
Full papers/articles (Journal)
Alternaria alternata TCTP, a novel cross-reactive ascomycete allergen.
Rid, R; Onder, K; MacDonald, S; Lang, R; Hawranek, T; Ebner, C; Hemmer, W; Richter, K; Simon-Nobbe, B; Breitenbach, M;
MOL IMMUNOL. 2009; 46(16): 3476-3487.
Full papers/articles (Journal)
Conference papers, proceedings, abstracts
A novel twist in the pathogenesis of Hidradenitis suppurativa: sweat gland cells attract Staphylococcus aureus adhesion by Cytokeratin 8
Haim, M; Onder, K; Bovell, D; Hintner, H; Bauer, JW
EXP DERMATOL. 2009; 18(3): 304-304.
Abstracts (Journal)
Aberrant KRT16-KRT5 protein interaction distort the equilibrium of KRT5-KRT14 heterodimers which may lead to skin fragility in ageing skin and blistering diseases
Maier, RH; Maier, CJ; Hintner, H; Trost, A; Bauer, JW; Onder, K
J INVEST DERMATOL. 2009; 129: S47-S47.
Abstracts (Journal)
Detailed domain mapping of the homodimer forming cytokeratin 16
Trost, A; Costa, I; Jakab, M; Ritter, M; Hintner, H; Onder, K; Bauer, JW
EXP DERMATOL. 2009; 18(3): 319-319.
Abstracts (Journal)
The vitamin D receptor pathway is linked to the spliceosome
Wagner, M; Hintner, H; Onder, K; Bauer, JW
EXP DERMATOL. 2009; 18(3): 323-323.
Abstracts (Journal)
2008
Journal Articles
The ORFeome of Staphylococcus aureus v 1.1.
Brandner, CJ; Maier, RH; Henderson, DS; Hintner, H; Bauer, JW; Onder, K;
BMC GENOMICS. 2008; 9: 321
Full papers/articles (Journal)
Nonsense-associated altered splicing of the Patched gene fails to suppress carcinogenesis in Gorlin syndrome.
Laimer, M; Onder, K; Schlager, P; Lanschuetzer, CM; Emberger, M; Selhofer, S; Hintner, H; Bauer, JW;
BRIT J DERMATOL. 2008; 159(1): 222-227.
Case Reports
Construction of a reading frame-independent yeast two-hybrid vector system for site-specific recombinational cloning and protein interaction screening.
Maier, R; Brandner, C; Hintner, H; Bauer, J; Onder, K;
BIOTECHNIQUES. 2008; 45(3): 235-244.
Full papers/articles (Journal)
Cytokeratin-related loss of cellular integrity is not a major driving force of human intrinsic skin aging.
Oender, K; Trost, A; Lanschuetzer, C; Laimer, M; Emberger, M; Breitenbach, M; Richter, K; Hintner, H; Bauer, JW;
MECH AGEING DEV. 2008; 129(10): 563-571.
Full papers/articles (Journal)
Conference papers, proceedings, abstracts
Does the human cytokeratin 8 represent a novel target protein to S. aureusadhesion?
Haim, M; Oender, K; Bauer, J
EXP DERMATOL. 2008; 17(3): 246-246.
Abstracts (Journal)
What a difference a ribosomal protein makes: rpL10 in aging and autism
Haubenreisser, O; Chiocchetti, A; Zhou, J; Oender, K; Bauer, J; Kellermann, J; Lottspeich, F; Klauck, S; Poustka, A; Hintner, H; Breitenbach, M; Breitenbach-Koller, H
FEBS J. 2008; 275: 72-72.
Abstracts (Journal)
Overcoming bacterial resistance with true novel antibiotics: The ORFeome of Staphylococcus aureus will connect to downstream xxxomicsxxx applications
Oender, K; Brandner, C; Maier, R; Maass, M; Bauer, JW
J INVEST DERMATOL. 2008; 128: S192-S192.
Abstracts (Journal)
2007
Journal Articles
Ribosomal proteins Rpl10 and Rps6 are potent regulators of yeast replicative life span.
Chiocchetti, A; Zhou, J; Zhu, H; Karl, T; Haubenreisser, O; Rinnerthaler, M; Heeren, G; Oender, K; Bauer, J; Hintner, H; Breitenbach, M; Breitenbach-Koller, L;
EXP GERONTOL. 2007; 42(4): 275-286.
Full papers/articles (Journal)
Rapid, high-quality and epidermal-specific isolation of RNA from human skin.
Trost, A; Bauer, JW; Lanschützer, C; Laimer, M; Emberger, M; Hintner, H; Onder, K;
EXP DERMATOL. 2007; 16(3): 185-190.
Full papers/articles (Journal)
Conference papers, proceedings, abstracts
Influence of human intrinsic skin aging on the cytoskeleton - the cellular response
Oender, K; Trost, A; Lanschuetzer, C; Laimer, M; Emberger, M; Breitenbach, M; Richter, K; Hintner, H; Bauer, JW
EXP DERMATOL. 2007; 16(3): 280-281.
Abstracts (Journal)
Cytokeratin gene expression profiling in intrinsic skin aging
Trost, A; Onder, K; Hintner, H; Bauer, JW
J INVEST DERMATOL. 2007; 127: S80-S80.
Abstracts (Journal)
2006
Journal Articles
Skin grafting as a therapeutic approach in pretibially restricted junctional epidermolysis bullosa.
Laimer, M; Bauer, JW; Klausegger, A; Koller, J; Pohla-Gubo, G; Muss, W; Sadler, E; Emberger, M; Lanschuetzer, CM; Hametner, R; Wally, V; Oender, K; Hinter, H;
BRIT J DERMATOL. 2006; 154(1): 185-187.
Case Reports
Haploinsufficiency due to deletion within the 3"-UTR of C1-INH-gene associated with hereditary angioedema.
Laimer, M; Klausegger, A; Aberer, W; Oender, K; Steinhuber, M; Lanschuetzer, CM; Wally, V; Hintner, H; Bauer, JW;
GENET MED. 2006; 8(4): 249-254.
Full papers/articles (Journal)
Introducing a fast and simple PCR-RFLP analysis for the detection of mutant thiopurine S-methyltransferase alleles TPMT*3A and TPMT*3C.
Oender, K; Lanschuetzer, CM; Laimer, M; Klausegger, A; Paulweber, B; Kofler, B; Hintner, H; Bauer, JW;
J EUR ACAD DERMATOL. 2006; 20(4): 396-400.
Full papers/articles (Journal)
Relative quantitation of protein-protein interaction strength within the yeast two-hybrid system via fluorescence beta-galactosidase activity detection in a high-throughput and low-cost manner.
Oender, K; Niedermayr, P; Hintner, H; Richter, K; Koller, L; Trost, A; Bauer, JW; Hundsberger, H;
ASSAY DRUG DEV TECHN. 2006; 4(6): 70-19.
Full papers/articles (Journal)
InSilico Proteomics System: Integration and Application of Protein and Protein-Protein Interaction Data using Microsoft.NET
Straßer, W; Siegl, D; Önder, K; Bauer, J;
Journal of integrative bioinformatics. 2006; 3 (2): 1-12.
Full papers/articles (Journal)
2005
Conference papers, proceedings, abstracts
The function of the N-terminal domain of TGF-beta II: A systematic genome-wide protein-protein interaction study in human keratinocytes
Niedermayr, P; Bauer, JW; Hintner, H; Kern, T; Strasser, W; Siegl, D; Oender, K
J INVEST DERMATOL. 2005; 125(3): A2-A2.
Abstracts (Journal)
Ribosomal proteins as candidate gatekeepers of differential mRNA translation
Pachler, K; Oender, K; Bauer, J; Hoflehner, E; Mitterhumer, E; Lottspeich, F; Breitenbach-Koller, L
MOL CELL PROTEOMICS. 2005; 4(8): S244-S244.
Abstracts (Journal)
Intrinsic skin aging regulates the cytoskeleton
Trost, A; Bauer, J; Richter, K; Hintner, H; Oender, K
J INVEST DERMATOL. 2005; 125(3): A24-A24.
Abstracts (Journal)
2004
Journal Articles
Functional interaction in establishment of ribosomal integrity between small subunit protein rpS6 and translational regulator rpL10/Grc5p.
Pachler, K; Karl, T; Kolmann, K; Mehlmer, N; Eder, M; Loeffler, M; Oender, K; Hochleitner, EO; Lottspeich, F; Bresgen, N; Richter, K; Breitenbach, M; Koller, L;
FEMS Yeast Res. 2004; 5(3):271-280
Full papers/articles (Journal)
Conference papers, proceedings, abstracts
Cytoskeletal protein network environment of bullous pemphigoid antigen 2 (BPAG2) validated by a new computational protein interaction methodology
Onder, K; Kern, T; Strasser, W; Hintner, H; Bauer, JW
J INVEST DERMATOL. 2004; 123(2):
Abstracts (Journal)
2003
Journal Articles
Translational regulator RpL10p/Grc5p interacts physically and functionally with Sed1p, a dynamic component of the yeast cell surface.
Oender, K; Loeffler, M; Doppler, E; Eder, M; Lach, S; Heinrich, F; Karl, T; Moesl, R; Hundsberger, H; Klade, T; Eckl, P; Dickinson, JR; Breitenbach, M; Koller, L;
Yeast. 2003; 20(4):281-294
Full papers/articles (Journal)
2001
Conference papers, proceedings, abstracts
Ribosomal protein Grc5p links the translational machinery to components of lipid metabolism.
Eder, M; Oender, K; Doppler, E; Loeffler, M; Fasiolo, F; Eckl, P; Breitenbach, M; Koller, L
YEAST. 2001; 18: S73-S73.
Abstracts (Journal)
1999
Journal Articles
GRC5 and NMD3 function in translational control of gene expression and interact genetically.
Karl, T; Onder, K; Kodzius, R; Pichová, A; Wimmer, H; Th r, A; Hundsberger, H; Löffler, M; Klade, T; Beyer, A; Breitenbach, M; Koller, L;
Curr Genet. 1999; 34(6):41-29
Full papers/articles (Journal)